PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_08309.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 370aa    MW: 41766.7 Da    PI: 4.4674
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_08309.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.52.1e-2261463128
                      NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvka...eekew..yfFskrdkkyatgkrknra. 77 
                               GfrFhPtd+el+ ++L + +++++l  + +ike+diyk +Pw   +        +   +++++  yf ++r+kk+++++r +r  
  Sme2.5_08309.1_g00005.1   6 EGFRFHPTDSELL-KFLVRFISKQPLCDDGFIKELDIYKQQPWLTYAlgyhcG--GdddGDTSIfrYFITPRHKKKKENDRFRRGv 88 
                              6************.9**********888899************7653455431..222233444679*****************53 PP

                      NAM  78 ....tksgyWkatgkdkevlskkgelvglkktLvfy....kgrapkgektdWvmheyrl 128
                                   + g+Wk+  k k+v+s ++  +glk++L++     + ++p   + +W+m+ey+l
  Sme2.5_08309.1_g00005.1  89 gvgdQNLGTWKQLDKGKQVTS-NSLIIGLKRSLTYGankkNSSSPPNDHGKWLMKEYEL 146
                              6665569**************.999**********944332344445699*******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.2764170IPR003441NAC domain
PfamPF023654.7E-146146IPR003441NAC domain
SuperFamilySSF1019413.01E-247168IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MELQEEGFRF HPTDSELLKF LVRFISKQPL CDDGFIKELD IYKQQPWLTY ALGYHCGGDD  60
DGDTSIFRYF ITPRHKKKKE NDRFRRGVGV GDQNLGTWKQ LDKGKQVTSN SLIIGLKRSL  120
TYGANKKNSS SPPNDHGKWL MKEYELSESI LKRFTNSDLR DYVICAIKSN PNKNAIPTPI  180
NMVEPTAQFQ EENCVFGFEN NVPMLPQYQP SHEGCTFSVK EDPVADWQYQ PLHEGCTGVN  240
EDPICTFGVN EDPPLHEGSI FGVNAIPTPN NMVEPTAQFQ VESGVLGFEN NVLVLPQYGP  300
SGCTFAVNED PMADWQYQSL DEGCIFGVNE DPITDESCAF GVNGDPIADW QVRANELYTD  360
FEKKNQSNCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17379RHKKKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010322988.18e-59PREDICTED: NAC domain-containing protein 45-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1427357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.49e-17NAC domain containing protein 82